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Rasmus Bååth's Research Blog Twitter About CV Research Blog Archives RSS The Tidyverse in a Table Dec 29 th , 2020 This was my submission to the 2020 RStudio Table Contest . For many good reasons it didnât qualify, you can check out all those good reasons here: Winners of the 2020 RStudio Table Contest. Some tables are beautiful. And yes, Iâm talking about the stats-and-numbers kind of tables and not the ones you get at IKEA. Some tables show carefully selected statistics, with headers in bold and spacious yet austere design; the numbers rounded to just the right number of decimal places. But here weâre not going to make a beautiful table, instead weâre making a useful table . In this tutorial, Iâm going show you how to take all the documentation, for all the functions in the tidyverse core packages , and condense it into one single table. Why is this useful? As weâre going to use the excellent DT package the result is going to be an interactive table that makes it easy to search, sort, and explore the functions of the tidyverse. Actually, letâs start with the finished table and then Iâll show you how itâs made. Or a screenshot of it, at least. To read on and to try out the interactive table check out my full submission here . Read on → Image Dithering in R Jan 22 nd , 2019 This January I played the most intriguing computer game Iâve played in ages: The Return of the Obra Dinn . Except for being a masterpiece of murder-mystery storytelling it also has the most unique art-style as it only uses black and white pixels. To pull this off Obra Dinn makes use of image dithering : the arrangement of pixels of low color resolution to emulate the color shades in between. Since the game was over all too quickly I thought I instead would explore how basic image dithering can be implemented in R. If old school graphics piques your interest, read on! There will be some grainy looking ggplot charts at the end. ( The image above is copyright Lucas Pope and is the title screen of The Return of the Obra Dinn ) Read on → Yet another visualization of the Bayesian Beta-Binomial model Dec 13 th , 2018 The Beta-Binomial model is the âhello worldâ of Bayesian statistics. That is, itâs the first model you get to run, often before you even know what you are doing. There are many reasons for this: It only has one parameter, the underlying proportion of success, so itâs easy to visualize and reason about. Itâs easy to come up with a scenario where it can be used, for example: âWhat is the proportion of patients that will be cured by this drug?â The model can be computed analytically (no need for any messy MCMC). Itâs relatively easy to come up with an informative prior for the underlying proportion. Most importantly: Itâs fun to see some results before diving into the theory! ð Thatâs why I also introduced the Beta-Binomial model as the first model in my DataCamp course Fundamentals of Bayesian Data Analysis in R and quite a lot of people have asked me for the code I used to visualize the Beta-Binomial. Scroll to the bottom of this post if thatâs what you want, otherwise, here is how I visualized the Beta-Binomial in my course given two successes and four failures: Read on → My introductory course on Bayesian statistics Dec 12 th , 2018 So, after having held workshops introducing Bayes for a couple of years now, I finally pulled myself together and completed my DataCamp course: Fundamentals of Bayesian Data Analysis in R ! ð Read on → A Stan case study, sort of: The probability my son will be stung by a bumblebee Aug 14 th , 2017 The Stan project for statistical computation has a great collection of curated case studies which anybody can contribute to, maybe even me, I was thinking. But I donât have time to worry about that right now because Iâm on vacation, being on the yearly visit to my old family home in the north of Sweden. What I do worry about is that my son will be stung by a bumblebee. His name is Torsten, heâs almost two years old, and he loves running around barefoot on the big lawn. Which has its fair share of bumblebees. Maybe I should put shoes on him so he wont step on one, but what are the chances, really. Well, what are the chances? I guess if I only had Data on the bumblebee density of the lawn. Data on the size of Torstenâs feet and how many steps he takes when running around. A reasonable Bayesian model, maybe implemented in Stan. I could figure that out. âHow hard can it be?â, I thought. And so I made an attempt. Getting the data To get some data on bumblebee density I marked out a 1 m² square on a representative part of the lawn. During the course of the day, now and then, I counted up how many bumblebees sat in the square. Read on → Video Introduction to Bayesian Data Analysis, Part 3: How to do Bayes? May 8 th , 2017 This is the last video of a three part introduction to Bayesian data analysis aimed at you who isnât necessarily that well-versed in probability theory but that do know a little bit of programming. If you havenât watched the other parts yet, I really recommend you do that first: Part 1 & Part 2 . This third video covers the how? of Bayesian data analysis: How to do it efficiently and how to do it in practice. But covers is really a big word, briefly introduces is really more appropriate. Along the way I will then briefly introduce Markov chain Monte Carlo, parameter spaces and the computational framework Stan : Read on → Video Introduction to Bayesian Data Analysis, Part 2: Why use Bayes? Feb 27 th , 2017 This is video two of a three part introduction to Bayesian data analysis aimed at you who isnât necessarily that well-versed in probability theory but that do know a little bit of programming. If you havenât watched part one yet, I really recommend you do that first, here it is . This second video covers the why? of Bayesian data analysis: Why (and when) use it instead of some other method of analyzing data? Read on → Video Introduction to Bayesian Data Analysis, Part 1: What is Bayes? Feb 13 th , 2017 This is video one of a three part introduction to Bayesian data analysis aimed at you who isnât necessarily that well-versed in probability theory but that do know a little bit of programming. I gave a version of this tutorial at the UseR 2015 conference, but I didnât get around doing a screencast of it. Until now, that is! I should warn you that this tutorial is quite handwavey (but itâs also pretty short), and if you want a more rigorous video tutorial I can really recommend Richard McElreathâs YouTube lectures . This first video covers the what? of Bayesian data analysis with part two and three covering the why? and the how? . I expect to be able to record part two and three over the next couple of weeks but, for now, here is part one: Read on → Beginners Exercise: Bayesian Computation with Stan and Farmer Jöns Jan 15 th , 2017 Over the last two years Iâve occasionally been giving a very basic tutorial to Bayesian statistics using R and Stan . At the end of the tutorial I hand out an exercise for those that want to flex their newly acquired skills. I call this exercise Bayesian computation with Stan and Farmer Jöns and itâs pretty cool! Now, itâs not cool because of me , but because the expressiveness of Stan allowed me to write a small number of data analytic questions that quickly takes you from running a simple binomial model up to running a linear regression. Throughout the exercise you work with the same model code and each question just requires you to make a minimal change to this code, yet you will cover most models taught in a basic statistics course! Well, briefly at least⦠:) If you want to try out this exercise yourself, or use it for some other purpose, you can find it here: Beginners Exercise: Bayesian computation with Stan and Farmer Jöns ( R-markdown source ) Solutions to Bayesian computation with Stan and Farmer Jöns ( R-markdo...
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